sc_utils.write_mtx¶
- sc_utils.write_mtx(adata, output_dir)[source]¶
Save scanpy object in mtx cellranger v3 format.
Saves basic information from adata object as cellranger v3 mtx folder. Saves only
adata.var_names
,adata.obs_names
andadata.X
fields. Creates directoryoutput_dir
if it does not exist. Creates 3 files:features.tsv.gz
,barcodes.tsv.gz
andmatrix.mtz.gz
. Will overwrite files in the output directory.- Parameters
adata – Annotated data matrix.
output_dir – Directory where to save results